MetaNetX
Automated Model Construction and Genome Annotation for Large-Scale Metabolic Networks

SPARQL query editor

MetaNetX SPARQL endpoint: https://rdf.metanetx.org/sparql/

Available identifier prefixes:

Data source	Prefix
Chemicals
MetaNetX	no prefix
InChIKey	no prefix
BiGG	biggM:
ChEBI	chebi:
enviPath	envipathM:
HMDB	hmdb:
KEGG compound	keggC:
KEGG drug	keggD:
KEGG glycan	keggG:
LipidMaps	lipidmapsM:
MetaCyc	metacycM:
Reactome	reactomeM:
SABIO-RK	sabiorkM:
SwissLipids	slm:
The SEED	seedM:
VMH	vmhM:
Reactions
MetaNetX	no prefix
BiGG	biggR:
KEGG	keggR:
MetaCyc	metacycR:
Rhea	rh:
SABIO-RK	sabiorkR:
The SEED	seedR:
VMH	vmhR:
Compartments
MetaNetX	no prefix
BiGG	biggC:
Gene Ontology	go:
The SEED	seedC:

- MNXref data RDF: MNXref.ttl.gz
- MetaNetX model RDF: MNXmnet.ttl.gz
- MNXref schema RDF: MNXref_schema.ttl
- Widoco schema documentation
- Diagrams to document the MetaNetX RDF schema
- A collection of tutorials about how to query SIB resources with SPARQL